PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

2014270 citationsJournal Articlegold Open Access

Authors

Changjin Hong · Boston University

Solaiappan Manimaran · Boston University

Ying Shen · Boston University

Joseph Perez-Rogers · Boston University

Allyson L. Byrd · University of Massachusetts Boston

Eduardo Castro‐Nallar · George Washington University Virginia Campus

Keith A. Crandall

Abstract

The results show that PathoScope 2.0 is a complete, highly sensitive, and efficient approach for metagenomic analysis that outperforms alternative approaches in scope, speed, and accuracy. The PathoScope 2.0 pipeline software is freely available for download at: http://sourceforge.net/projects/pathoscope/.

Topics & Keywords

Genomics and Phylogenetic Studies Gut microbiota and health Microbial Community Ecology and Physiology

Publication Details

Published in: Microbiome

Volume 2, Issue 1, pp. 33-33

DOI: 10.1186/2049-2618-2-33

Field-Weighted Citation Impact: 6.12

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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

Authors

Abstract

Topics & Keywords

Publication Details