Manipulation of FASTQ data with Galaxy

2010707 citationsJournal Articlehybrid Open Access

Authors

Daniel Blankenberg · Emory University

Assaf Gordon · Cold Spring Harbor Laboratory

Gregory Von Kuster · Emory University

Nathan Coraor · Cold Spring Harbor Laboratory

James Taylor · Howard Hughes Medical Institute

Anton Nekrutenko · Emory University

the Galaxy Team

Abstract

This open-source toolset was implemented in Python and has been integrated into the online data analysis platform Galaxy (public web access: http://usegalaxy.org; download: http://getgalaxy.org). Two short movies that highlight the functionality of tools described in this manuscript as well as results from testing components of this tool suite against a set of previously published files are available at http://usegalaxy.org/u/dan/p/fastq

Topics & Keywords

Genomics and Phylogenetic Studies Glycosylation and Glycoproteins Research RNA and protein synthesis mechanisms

UN Sustainable Development Goals

Partnerships for the goals

Publication Details

Published in: Bioinformatics

Volume 26, Issue 14, pp. 1783-1785

DOI: 10.1093/bioinformatics/btq281

Field-Weighted Citation Impact: 10.14