Sambamba: fast processing of NGS alignment formats

20152,637 citationsJournal Articlehybrid Open Access

Authors

Artem Tarasov · Royal Netherlands Academy of Arts and Sciences

Albert J. Vilella · Royal Netherlands Academy of Arts and Sciences

Edwin Cuppen · Royal Netherlands Academy of Arts and Sciences

Isaäc J. Nijman · Royal Netherlands Academy of Arts and Sciences

Pjotr Prins · Royal Netherlands Academy of Arts and Sciences

Abstract

Sambamba is free and open source software, available under a GPLv2 license. Sambamba can be downloaded and installed from http://www.open-bio.org/wiki/Sambamba.Sambamba v0.5.0 was released with doi:10.5281/zenodo.13200.

Topics & Keywords

Genomics and Phylogenetic Studies Microbial Community Ecology and Physiology Scientific Computing and Data Management

Publication Details

Published in: Bioinformatics

Volume 31, Issue 12, pp. 2032-2034

DOI: 10.1093/bioinformatics/btv098

Field-Weighted Citation Impact: 24.60

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Sambamba: fast processing of NGS alignment formats

Authors

Abstract

Topics & Keywords

Publication Details