ANGSD: Analysis of Next Generation Sequencing Data

20143,206 citationsJournal Articlegold Open Access

Authors

Thorfinn Sand Korneliussen · Natural History Museum of Denmark

Anders Albrechtsen · University of Copenhagen

Rasmus Nielsen · University of California, Berkeley

Abstract

The open source c/c++ program ANGSD is available at http://www.popgen.dk/angsd . The program is tested and validated on GNU/Linux systems. The program facilitates multiple input formats including BAM and imputed beagle genotype probability files. The program allow the user to choose between combinations of existing methods and can perform analysis that is not implemented elsewhere.

Topics & Keywords

Genetic factors in colorectal cancer Genomics and Rare Diseases Cancer Genomics and Diagnostics

Publication Details

Published in: BMC Bioinformatics

Volume 15, Issue 1, pp. 356-356

DOI: 10.1186/s12859-014-0356-4

Field-Weighted Citation Impact: 50.75

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ANGSD: Analysis of Next Generation Sequencing Data

Authors

Abstract

Topics & Keywords

Publication Details