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1 Copepoda, Ostracoda and ‘Cladocera’ are important meiobenthic Crustacea which can be both numerically abundant and species rich in running waters. Harpacticoids and ostracods are well adapted to benthic life because they are typical crawlers, walkers, and burrowers. Many cladocerans are substratum dwellers, but most benthic species among these can also swim. Cyclopoids which are generally good swimmers are nevertheless often bottom frequenters and actively colonise sediment interstices (the hyporheic zone). 2 The subclass Copepoda includes 10 orders. With 53 families, the order Harpacticoida dominates the benthos. Only five of these families are represented in fresh waters (ca. 1 000 species and subspecies). The order Cyclopoida includes 12 families of which the Cyclopidae is well represented in freshwater habitats with 900 species and subspecies. Freshwater Ostracods belong to the order Podocopida (5 000 species) with three superfamilies occurring in running fresh waters. The group ‘Cladocera’ contains four orders, 12 families, more than 80 genera, and 450–600 freshwater species. Most of the benthic species are found in the families Chydoridae (39 genera), Macrothricidae, Ilyocryptidae and Sididae. 3 For each of the three major taxa, morphological characteristics are presented, specimen collection and preparation are described and references to available taxonomical keys are provided. 4 Biological characteristics are extremely diverse among and within the three taxa, resulting in a great variety of strategies in meiobenthic crustaceans. Characteristics of reproduction, sexual dimorphism, cyclomorphosis and population parameters (i.e. clutch size, lifespan, growth, moulting) are provided for some of the most common species. 5 Important differences between the three main taxa were found at the species level. Ecological requirements such as hydraulic microhabitats and geomorphologic features of the streambed are the major determinants of species diversity and abundance for benthic microcrustacea of lotic habitats. Many studies on the ecology of these communities are limited by a lack of knowledge of the life history characterisitics of lotic (especially interstitial) crustacean populations.