A faster circular binary segmentation algorithm for the analysis of array CGH data

2007968 citationsJournal Articlebronze Open Access

Authors

E. S. Venkatraman · Memorial Sloan Kettering Cancer Center

Adam B. Olshen · Memorial Sloan Kettering Cancer Center

Abstract

An R version of the CBS algorithm has been implemented in the "DNAcopy" package of the Bioconductor project. The proposed hybrid method for the P-value is available in version 1.2.1 or higher and the stopping rule for declaring a change early is available in version 1.5.1 or higher.

Topics & Keywords

Gene expression and cancer classification Genomic variations and chromosomal abnormalities Chromosomal and Genetic Variations

Publication Details

Published in: Bioinformatics

Volume 23, Issue 6, pp. 657-663

DOI: 10.1093/bioinformatics/btl646

Field-Weighted Citation Impact: 22.75

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A faster circular binary segmentation algorithm for the analysis of array CGH data

Authors

Abstract

Topics & Keywords

Publication Details