IMG/M: a data management and analysis system for metagenomes

2007385 citationsJournal Articlegold Open Access

Authors

Victor Markowitz · Lawrence Berkeley National Laboratory

Natalia Ivanova · Lawrence Berkeley National Laboratory

Ernest Szeto · Joint Genome Institute

Krishna Palaniappan · Joint Genome Institute

Kung‐Hui Chu · Lawrence Berkeley National Laboratory

Daniel Dalevi · Lawrence Berkeley National Laboratory

I-M. A. Chen

Abstract

IMG/M is a data management and analysis system for microbial community genomes (metagenomes) hosted at the Department of Energy's (DOE) Joint Genome Institute (JGI). IMG/M consists of metagenome data integrated with isolate microbial genomes from the Integrated Microbial Genomes (IMG) system. IMG/M provides IMG's comparative data analysis tools extended to handle metagenome data, together with metagenome-specific analysis tools. IMG/M is available at http://img.jgi.doe.gov/m.

Topics & Keywords

Genomics and Phylogenetic Studies Microbial Community Ecology and Physiology Gut microbiota and health

Publication Details

Published in: Nucleic Acids Research

Volume 36, Issue Database, pp. D534-D538

DOI: 10.1093/nar/gkm869

Field-Weighted Citation Impact: 10.58

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IMG/M: a data management and analysis system for metagenomes

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Abstract

Topics & Keywords

Publication Details