SimpleElastix: SimpleElastix v0.9.0

SimpleElastix is a fork of SimpleITK that integrates elastix and transformix. The goal of SimpleElastix is to bring robust registration algorithms to a wider audience and make it easier to use elastix for e.g. Java-based enterprise applications or rapid Python prototyping. This package provides elastix and transformix bindings for Python, Java, R, Ruby, Octave, Lua, Tcl and C# (see elastix manual for a list of supported registration algorithms). Installation, examples, usage and introductory material at simpleelastix.readthedocs.org. A user-friendly API that aligns with the design philosophy of SimpleITK, developed specifically for rapid prototyping and use in scripting languages. Pre-configured parameter files that should serve as good starting points for new users. A SuperBuild that automatically compiles and installs SimpleElastix and any dependencies. The complete set of SimpleITK image processing algorithms. It is our hope that this package will lower the entry barrier for new elastix users and that it will be a useful alternative to scripting command line arguments in larger projects. If you experience any issues using SimpleElastix, pull requests and issues on Github are greatly appreciated.