SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

2018222 citationsJournal Articlebronze Open Access

Authors

Timothy J. Dallman · Public Health England

Philip Ashton · Oxford University Clinical Research Unit

Ulf Schafer · Public Health England

Aleksey Jironkin · Public Health England

Anaïs Painset · Public Health England

Sharif Shaaban · Roslin Institute

Hassan Hartman ·

Abstract

SnapperDB is implemented as a python application under the open source BSD license. All code and user guides are available at https://github.com/phe-bioinformatics/snapperdb. Reference genomes and SnapperDB configs are available at https://github.com/phe-bioinformatics/snapperdb_references.

Topics & Keywords

Genomics and Phylogenetic Studies Microbial Community Ecology and Physiology Gut microbiota and health

Publication Details

Published in: Bioinformatics

Volume 34, Issue 17, pp. 3028-3029

DOI: 10.1093/bioinformatics/bty212

Field-Weighted Citation Impact: 9.37

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SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

Authors

Abstract

Topics & Keywords

Publication Details