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Emerging neural networks based machine learning techniques such as deep learning and its variants have shown tremendous potential in many application domains. However, they raise serious privacy concerns due to the risk of leakage of highly privacy-sensitive data when data collected from users is used to train neural network models to support predictive tasks. To tackle such serious privacy concerns, several privacy-preserving approaches have been proposed in the literature that use either secure multi-party computation (SMC) or homomorphic encryption (HE) as the underlying mechanisms. However, neither of these cryptographic approaches provides an efficient solution towards constructing a privacy-preserving machine learning model, as well as supporting both the training and inference phases. To tackle the above issue, we propose a CryptoNN framework that supports training a neural network model over encrypted data by using the emerging functional encryption scheme instead of SMC or HE. We also construct a functional encryption scheme for basic arithmetic computation to support the requirement of the proposed CryptoNN framework. We present performance evaluation and security analysis of the underlying crypto scheme and show through our experiments that CryptoNN achieves accuracy that is similar to those of the baseline neural network models on the MNIST dataset.