ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

2020196 citationsJournal Articlegold Open Access

Authors

Silas Kieser · SIB Swiss Institute of Bioinformatics

Joseph Brown · Pacific Northwest National Laboratory

Evgeny M. Zdobnov · University of Geneva

Lee Ann McCue · Pacific Northwest National Laboratory

Abstract

ATLAS provides a user-friendly, modular and customizable Snakemake workflow for metagenome data processing; it is easily installable with conda and maintained as open-source on GitHub at https://github.com/metagenome-atlas/atlas.

Topics & Keywords

Genomics and Phylogenetic Studies Microbial Community Ecology and Physiology Gut microbiota and health

Publication Details

Published in: BMC Bioinformatics

Volume 21, Issue 1, pp. 257-257

DOI: 10.1186/s12859-020-03585-4

Field-Weighted Citation Impact: 7.86

Command Palette

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data

Authors

Abstract

Topics & Keywords

Publication Details