epiforecasts/covidregionaldata: 0.9.3

This is largely a patch release dealing with processing issues introduced by the recent release of <code>tidyr 1.2.0</code>. In addition support for data from Estonia and Vietnam has been added. See the full release notes for details. Thanks to @RichardMN, @biocyberman, @Bisaloo, @sbfnk, and @kathsherratt for contributing to this release. New data sets Support for level 1 region data in Estonia (thanks to @RichardMN). See <code>?Estonia</code> for details. Support for level 1 region data in Vietnam (thanks to @biocyberman). See <code>?Vietnam</code> for details. Note that this class is only available if installing the <code>vietnam</code> branch from GitHub due to API instability issues. Other changes Change the data source for Switzerland to draw data from the Swiss Federal Office of Public Health (FOPH) Updated the package logo to include the newly supported data sets. Reduced the number of package dependencies (@bisaloo and @RichardMN) Added tests for JSON download code (@RichardMN). Bug fixes Fixed a bug in <code>fill_empty_dates_with_na()</code> caused by changes made in version <code>1.2.0</code> of <code>tidyr</code>. Fixed a bug in the data sourced from Germany so that instead of treating it as a line list of individuals it is treated as a relatively finely resolved count data which needs to be summed up (by @sbfnk). Fixed a bug in the Vietnam class due to <code>stringr</code> (#448 by @RichardMN). Fixed a bug with the Netherlands class were the lack of Hospitalisation data in the source was causing the class to fail (#446 by @RichardMN). Fixed an issue with the Colombia data and reduced dependencies by making <code>RSocrata</code> be a suggested package (#433 by @RichardMN). Depreciations <code>get_interventions_data()</code> has been depreciated and removed. <code>get_info_covidregionaldata()</code> has been depreciated and removed. The <code>country</code> argument to <code>get_national_data()</code> has been depreciated and removed. It's functionality can be replicated using the <code>countries</code> argument. <code>get_linelist()</code> has been updated to fail on use vs warn on use and will be removed from future versions of the package. What's Changed Fixing paper formatting. by @arfon in https://github.com/epiforecasts/covidregionaldata/pull/395 fixed Richards last name by @joseph-palmer in https://github.com/epiforecasts/covidregionaldata/pull/396 added link to discord chat in readme badge by @joseph-palmer in https://github.com/epiforecasts/covidregionaldata/pull/401 Fixes citation by rebuilding readme by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/402 Make bot less bossy by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/407 Add Estonia data by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/417 Add subnational data for Vietnam by @biocyberman in https://github.com/epiforecasts/covidregionaldata/pull/413 Update vietnam url and docs by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/428 Update stable API URL of Vietnam by @ilumitr in https://github.com/epiforecasts/covidregionaldata/pull/427 fix Germany case/death data by @sbfnk in https://github.com/epiforecasts/covidregionaldata/pull/436 Remove action re-building JOSS paper by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/438 Fix giant logo by specifying width instead of height by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/442 Switch to bootstrap 5 for pkgdown by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/443 New data source for Switzerland - fix for #412 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/429 Update pr-checklist.yaml to include news nudge by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/439 Reduce the number of <code>Imports</code> by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/437 Fix website URL by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/444 Hugo: ctb -&gt; aut by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/416 Don't rely on exact column ordering when grouped data is involved by @DavisVaughan in https://github.com/epiforecasts/covidregionaldata/pull/445 Fix lintr warnings by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/450 Bug 454 countrycode by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/455 Bug #449 tidyr complete by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/453 Refactor Vietnam cleaning code and change string conversion function - fixes #447 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/448 Depreciations by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/456 Add tests for json_reader function and sample json data by @Bisaloo in https://github.com/epiforecasts/covidregionaldata/pull/451 Adjust for Netherlands - remove Hospitalisation data - partial fix for #430 by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/446 Alternate fix colombia data 430 which makes RSocrata suggested by @RichardMN in https://github.com/epiforecasts/covidregionaldata/pull/433 Bug: #460 Colombia failing tests by @seabbs in https://github.com/epiforecasts/covidregionaldata/pull/461 New Contributors @arfon made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/395 @biocyberman made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/413 @ilumitr made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/427 @DavisVaughan made their first contribution in https://github.com/epiforecasts/covidregionaldata/pull/445 <strong>Full Changelog</strong>: https://github.com/epiforecasts/covidregionaldata/compare/0.9.2...v0.9.3