METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

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Authors

Zhichao Zhou · University of Wisconsin–Madison

Patricia Q. Tran · University of Wisconsin–Madison

Adam M. Breister · University of Wisconsin–Madison

Yang Liu · Shenzhen University

Kristopher Kieft · University of Wisconsin–Madison

Elise S. Cowley · University of Wisconsin–Madison

Ulaş Karaöz

Abstract

METABOLIC enables the consistent and reproducible study of microbial community ecology and biogeochemistry using a foundation of genome-informed microbial metabolism, and will advance the integration of uncultivated organisms into metabolic and biogeochemical models. METABOLIC is written in Perl and R and is freely available under GPLv3 at https://github.com/AnantharamanLab/METABOLIC . Video abstract.

Topics & Keywords

Microbial Metabolic Engineering and Bioproduction Bioinformatics and Genomic Networks Gut microbiota and health

Publication Details

Published in: Microbiome

Volume 10, Issue 1, pp. 33-33

DOI: 10.1186/s40168-021-01213-8

Field-Weighted Citation Impact: 49.08

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METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks

Authors

Abstract

Topics & Keywords

Publication Details