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Combined U-Pb zircon data of granitic, dioritic, and gabbroic suites reveal development of arc-related magmatism in South Borneo throughout the Late Mesozoic but dominantly in the Cretaceous (144–72 Ma). Cretaceous igneous suites constitute the Schwaner-Singkawang, Kuching-LongPahangai, and Meratus-West Java magmatic arc zones. Arc-related felsic suites are low-K tholeiitic, and calc-alkaline to high-K calc-alkaline. Most of them are metaluminous (A/CNK 0.7–1.1), I-type, and have high large-ion lithophile element (LILE) contents, low high-field strength element (HFSE) contents, and low crystallization temperatures (688–769 °C). A few rocks have adakite characteristics, such as high Sr/Y and low Y. Late Cretaceous granitic suites from South Schwaner, which evolved at elevated temperature (761–852 °C), have diverse compositions that range from I-type transitional to A-type. The highly fractionated chemistry of these samples is attributed to an intraplate stretching tectonic setting. This regime is consistent with tectonic controls of the synchronous tholeiitic suites within North Schwaner. Two subduction systems beneath Sundaland converged and interacted during the Cretaceous. The Paleo-Pacific subduction in the north built arc-trench architectures, as shown by the Early Cretaceous Lupar Line mélange, the Schwaner to Singkawang magmatic arc, and the Late Cretaceous Lupar Line mélange and Kuching-LongPahangai arc. The Meso-Tethys subduction in the southeast produced the Cretaceous Schwaner-Singkawang magmatic arc, Meratus to Luk-Ulo mélanges, and Meratus-West Java magmatic arc. When entered into Late Cretaceous, slab rollback led to crustal stretching in the Schwaner to Singkawang regions, with the production of A-type transitional and tholeiitic suites. Though debatable, we infer the SW Borneo block to be a Sundaland continuation; Semitau shows an affinity for South Cathaysia. Both of the terranes would accrete onto Sundaland during the Indosinian orogeny.