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Abstract Here, we show the possible correlation between the anatomical characteristics of epidermal cells of Arabidopsis thaliana with the stomata transient opening, which is commonly called the Wrong-Way Response (WWR). The WWR was induced by either reduced air humidity or leaf excision. Five genotypes of A. thaliana Col8, epf1epf2, lcd1-1 , SALK069, and UBP, respectively, with anatomical differences in epidermal cells such as stomatal density, stomata size, size, and shape of the pavement cells were selected. These genotypes allowed us to investigate the mutual effects of stomata density and size on WWR. Scanning Electron Microscopy (SEM) was applied for image acquisition of the abaxial and adaxial surface of the leaves and the main features of the epidermal cells were extracted by one of the additions to the MiToBo plugin of ImageJ/Fiji called PaCeQuant. The stomatal conductance to water vapor (gs) was measured using the portable photosynthesis measurement system LICor-6800. Our linear models showed that the size of the stomata explained the rate of WWR induced by reduced air humidity, so genotypes with smaller stomata showed a smaller rate of the WWR. After leaf excision, however, there was no correlation between the size of the stomata and the rate of the WWR. Moreover, we found that after both, reduced air humidity and leaf excision, the size of the pavement cells on the abaxial surface is correlated to the rate of the WWR; genotypes with smaller pavement cells on the abaxial surface had a smaller rate of WWR.