nf-core/sarek: 3.7.0 - Saltoluokta

What's Changed New Tools https://github.com/nf-core/sarek/pull/2044 - Added VCF filtering with bcftools after variant calling https://github.com/nf-core/sarek/pull/2049 - Added consensus calling for small variants called by multiple tools (default: 2+ tools) New Parameters: --filter_vcfs - Enable VCF filtering --bcftools_filter_criteria - Filter criteria for bcftools --snv_consensus_calling - Enable consensus calling --consensus_min_count - Minimum tool count for consensus Bug Fixes: https://github.com/nf-core/sarek/pull/2045 - Fixed fastp shard naming propagation through BBSplit for unique Markduplicates naming https://github.com/nf-core/sarek/pull/2060 - Fixed bbsplit index staging by switching to symlinks instead of full copy Developer Changes: https://github.com/nf-core/sarek/pull/1979 - Updated prepare_genome subworkflow for language server compliance https://github.com/nf-core/sarek/pull/2043 - Refactored postvariantcalling and separated varlociraptor https://github.com/nf-core/sarek/pull/2053 - Fixed yte input channel to disambiguate scenario file rendering https://github.com/nf-core/sarek/pull/2054 - Fixed typo on tbi_sentieon_dnascope channel https://github.com/nf-core/sarek/pull/2058 - Template update for nf-core/tools v3.5.1 https://github.com/nf-core/sarek/pull/2047 - use new runsOn syntax for larger runners https://github.com/nf-core/sarek/pull/2048 - No null value for {snpeff,vep}_cache by default https://github.com/nf-core/sarek/pull/2058 - Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot New Contributors @mashehu made their first contribution in https://github.com/nf-core/sarek/pull/2047 Full Changelog: https://github.com/nf-core/sarek/compare/3.6.1...3.7.0