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Background The SCALE-UP project aims to support regional bioeconomies, fostering social, environmental, and economic benefits for rural areas. It improves the multi-actor partnerships—comprising private companies, governments, policymakers, civil society groups, and researchers—to scale innovative, sustainable, bio-based value chains utilizing regional resources. An essential aspect of this target is the inclusion of citizens and attention to the social dimensions of bio-based solutions, with social innovation playing a critical role in promoting sustainable development. Methods In the frame of SCALE-UP project, the concept of social innovation was explored, focusing on its application in bioeconomy projects. Best practices were identified through a detailed analysis of regional contexts, gathering data from various stakeholders involved in bio-based initiatives. This information was systematically collected and synthesized to provide a comprehensive understanding of how social innovation can be integrated into bioeconomy development. Results The research highlighted several successful examples of social innovation in regional bioeconomy projects. These practices showed the importance of inclusive approaches, where local communities play a significant role in shaping and benefiting from sustainable bio-based value chains. The findings also highlighted the need for collaborative efforts across different sectors to effectively scale such practices. Conclusions The results of this work offer valuable insights for regional stakeholders aiming to develop sustainable bioeconomies. The analysis of social innovation within the SCALE-UP project provides a framework for integrating social dimensions into bio-based solutions, ensuring that they contribute to long-term rural development. The best practices identified serve as a useful reference for stakeholders seeking to implement or enhance bioeconomy initiatives in their regions. A revised version will be uploaded once approved.