nf-core/smrnaseq: v2.4.1 - 2026-01-07 - Navy Iron Boxer Patch

What's Changed Fix igenomes_base in nextflow_schema by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/479 Issue 477 by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/481 Add docs mirtop by @atrigila in https://github.com/nf-core/smrnaseq/pull/482 Replace CSVTK_JOIN to improve processing in large amount of files by @atrigila in https://github.com/nf-core/smrnaseq/pull/486 bugfix/mirtrace-species-not-defined by @kopichris in https://github.com/nf-core/smrnaseq/pull/493 bugfix/update-fasta-help by @kopichris in https://github.com/nf-core/smrnaseq/pull/494 Converted ch_bowtie_index to value channel by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/498 Bump-blat by @apeltzer in https://github.com/nf-core/smrnaseq/pull/502 Fix mirgenedb mirtop by @lpantano in https://github.com/nf-core/smrnaseq/pull/507 add codeowners by @lpantano in https://github.com/nf-core/smrnaseq/pull/509 Update mirtop and snapshots by @andresferben in https://github.com/nf-core/smrnaseq/pull/513 Update nf-core template version 3.3.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/515 Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in https://github.com/nf-core/smrnaseq/pull/510 Template 3.5.1 Update by @andresferben in https://github.com/nf-core/smrnaseq/pull/518 Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in https://github.com/nf-core/smrnaseq/pull/516 JSON schema improvements by @andresferben in https://github.com/nf-core/smrnaseq/pull/520 Update nf-core modules and subworkflows by @andresferben in https://github.com/nf-core/smrnaseq/pull/521 Simplify tests by @andresferben in https://github.com/nf-core/smrnaseq/pull/522 Prepare for release 2.4.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/523 Update UMI trimming docs before release by @atrigila in https://github.com/nf-core/smrnaseq/pull/526 Version 25.04.2 fixes the conda --mkdir error by @andresferben in https://github.com/nf-core/smrnaseq/pull/525 Update release date by @andresferben in https://github.com/nf-core/smrnaseq/pull/527 Release 2.4.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/524 New Contributors @kopichris made their first contribution in https://github.com/nf-core/smrnaseq/pull/493 @andresferben made their first contribution in https://github.com/nf-core/smrnaseq/pull/513 Full Changelog: https://github.com/nf-core/smrnaseq/compare/2.4.0...2.4.1