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What's Changed Increase dev version by @ypriverol in https://github.com/bigbio/quantms/pull/579 fixing of bug in msstats_tmt.R (Issue: Error in the msstats_tmt.R function parse_contrasts #577) by @kai-lawsonmcdowall in https://github.com/bigbio/quantms/pull/578 Pass correct flag to ProteinQuantifier by @johnne in https://github.com/bigbio/quantms/pull/581 fixed rescoring range bugs by @daichengxin in https://github.com/bigbio/quantms/pull/583 update pmultiqc version 0.0.36 by @ypriverol in https://github.com/bigbio/quantms/pull/595 Support ppm fragment tolerance via alphapeptdeep feature generator by @Copilot in https://github.com/bigbio/quantms/pull/597 minor bug change to pmultiqc by @ypriverol in https://github.com/bigbio/quantms/pull/598 :bug: allow editing using nf-core pipelines schema build by setting fa_icon by @enryH in https://github.com/bigbio/quantms/pull/590 :art: address ifEmpty(null) by @enryH in https://github.com/bigbio/quantms/pull/600 Upgrade trfp 1.3.4 -> 1.4.5 by @ypriverol in https://github.com/bigbio/quantms/pull/601 Add support for TMT16 and TMT18 correction matrix files by @MaLLLiYA in https://github.com/bigbio/quantms/pull/599 Update and clarify SDRF and Json-Parameter parsing by @enryH in https://github.com/bigbio/quantms/pull/596 Reduce logo size used in pmultiqc by @yueqixuan in https://github.com/bigbio/quantms/pull/605 More linting by @enryH in https://github.com/bigbio/quantms/pull/602 some updates related with diann, ptms and pmultiqc small issues by @ypriverol in https://github.com/bigbio/quantms/pull/614 update quantms-utils 0.0.24 & pmultiqc 0.0.39 by @ypriverol in https://github.com/bigbio/quantms/pull/615 Fix trailing whitespace and code formatting by @Copilot in https://github.com/bigbio/quantms/pull/618 Format by @enryH in https://github.com/bigbio/quantms/pull/603 bug fix when parameter model_dir is wrongly provided by @ypriverol in https://github.com/bigbio/quantms/pull/619 Error of quantms-rescoring process with AWS by @ypriverol in https://github.com/bigbio/quantms/pull/621 Add support for .dia file format and improve file format documentation by @Copilot in https://github.com/bigbio/quantms/pull/623 Add onsite module by @weizhongchun in https://github.com/bigbio/quantms/pull/626 move thermorawfileparser from local to bigbio nf-core by @daichengxin in https://github.com/bigbio/quantms/pull/627 update quantms-rescoring to support MS2 transfer learning by @daichengxin in https://github.com/bigbio/quantms/pull/629 fixed quantms-rescoring by @daichengxin in https://github.com/bigbio/quantms/pull/631 using the bigbio onsite module by @weizhongchun in https://github.com/bigbio/quantms/pull/630 Fix some issues in onsite by @weizhongchun in https://github.com/bigbio/quantms/pull/634 small changes for release by @ypriverol in https://github.com/bigbio/quantms/pull/635 minor changes for release by @ypriverol in https://github.com/bigbio/quantms/pull/636 Minor changes by @ypriverol in https://github.com/bigbio/quantms/pull/637 Release 1.7.0 - Major changes with quantms-rescoring by @ypriverol in https://github.com/bigbio/quantms/pull/625 New Contributors @kai-lawsonmcdowall made their first contribution in https://github.com/bigbio/quantms/pull/578 @johnne made their first contribution in https://github.com/bigbio/quantms/pull/581 @MaLLLiYA made their first contribution in https://github.com/bigbio/quantms/pull/599 @weizhongchun made their first contribution in https://github.com/bigbio/quantms/pull/626 Full Changelog: https://github.com/bigbio/quantms/compare/1.6.0...1.7.0