nf-core/mag: mag 5.4.0 - Yellow Frog

Added #965 - Add support for the generation of custom contig to bin map files for all bins and refined bins (by @jfy133, @prototaxites) #965 - Add support for optional saving of DAS Tool inpout contig2bin map files via --refine_bins_dastool_savecontig2bin, with now singular generation process (by @jfy133, @prototaxites) #963 - Add support for outputting and median summarising pyDamage results at bin level when running in ancient DNA mode (by @jfy133) #931 - Added ALE (Assembly Likelihood Estimator) for probabilistic assembly quality control (by @PetcuBogdan, @dialvarezs) Changed #966 - Replace aria2c downloading of CheckM2 database with native Nextflow downloading due to Zenodo issues (by @jfy133, @dialvarezs) Fixed #962 - MetaBinner/SemiBin2 are included during bin refinement with DASTool. (by @AlexHoratio) Dependencies | Tool | Previous version | New version | | ---- | ---------------- | ----------- | | ale | | 20180904 |