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Climate change alters the oceans' temperature, pH, and oxygen concentration. These changes are expected to increase globally over the coming decades, affecting a wide range of marine organisms. Coastal upwelling zones, characterized by their high environmental variability, serve as ideal natural laboratories to study the potential impacts on marine organisms and ecosystems of temperature change, acidification, and ocean deoxygenation. The estimation of survival using capture-mark-recapture (CMR) data has been commonly applied to vertebrates, and to date, very few studies have been done on marine invertebrate organisms. In this study, we combined field CMR data and laboratory measurements to assess the physiological responses (metabolic rate and heart rate) and survival probability of individuals in two populations of intertidal mollusks, <i>Chiton granosus</i> and <i>Scurria zebrina</i>, in contrasting upwelling environments (i.e., semi-permanent vs. seasonal). We found that (1) there are no differences between the two studied populations for heart rate in both species, (2) the <i>S. zebrina</i> population subjected to seasonal upwelling has a higher metabolism, (3) there are no differences in the calcification rate between the two studied populations of both species, and (4) survival is significantly higher in the semi-permanent upwelling location for both species. Our findings highlight species-specific responses to contrasting upwelling regimes, suggesting that phenotypic plasticity and survival differences may influence resilience under ongoing climate change.