Advancing Legionella pneumophila genomic surveillance with a high-resolution cg/wgMLST schema for outbreak detection and investigation (Supplementary material)

This repository contains the supplementary data and genome assemblies generated in the frame of the study: "Advancing Legionella pneumophila genomic surveillance with a high-resolution cg/wgMLST schema for outbreak detection and investigation" by Mixão et al. 2026. In this repository you will find: "00_Supplementary_material.zip" - In this folder there are all Supplementary files and figures generated by this study and that served as source data for the main figures. Citation If you use this schema or the provided datasets in your work, please cite: Verónica Mixão, Christophe Ginevra, Camille Jacqueline, Sophie Jarraud, Marco Gabrielli, João Paulo Gomes, Melisa J. Willby, Jennafer A. P. Hamlin, Vítor Borges (2026) Advancing Legionella pneumophila genomic surveillance with a high-resolution cg/wgMLST schema for outbreak detection and investigation. medRxiv. doi: https://doi.org/10.64898/2026.02.18.26346554. This repository Funding VM contribution was funded by national funds through FCT - Foundation for Science and Technology, I.P., in the frame of Individual CEEC 2022.00851.CEECIND/CP1748/CT0001 (doi: 10.54499/2022.00851.CEECIND/CP1748/CT0001). VB contribution was supported by the European Union project “Sustainable use and integration of enhanced infrastructure into routine genome-based surveillance and outbreak investigation activities in Portugal” - GENEO [101113460] on behalf of the EU4H programme [EU4H-2022-DGA-MS-IBA-01-02], and by the DURABLE “Research Network against Epidemics” project. DURABLE is co-funded by The European Commission Union under the EU4Health Programme (EU4H) [101102733]. HCL and INSA are designated as European Reference Laboratory for Public Health on Legionella (EURL-PH-LEGI). This publication is funded by the EU4Health programme under grant agreement 101194818, as part of the project EURL-PH-LEGI. However, views and opinions expressed are those of the authors only and do not necessarily reflect those of the European Union or the European Health and Digital Executive Agency. Neither the European Union nor the granting authority can be held responsible. CDC disclaimer: The use of trade names is for identification only. It does not constitute endorsement by the U.S. Department of Health and Human Services, the U.S. Public Health Service, or the Centers for Disease Control and Prevention. The findings and conclusions in this report are those of the authors and do not necessarily represent the official position of the Centers for Disease Control and Prevention.