Spatial transcriptomics data and microbial mismatch ratio analysis for HNSC (HNSC-1 and HNSC-2)

This dataset provides raw and processed spatial transcriptomics data for Head and Neck Squamous Cell Carcinoma (HNSC), specifically for specimens HNSC-1 and HNSC-2. It includes raw FASTQ sequences, aligned BAM files (including unmapped reads), and processed AnnData (h5ad) objects containing microbial mismatch ratio analysis results. These data support the methodology described in "Analysis of unmapped RNA-seq data from cancer spatial transcriptome to decipher cancer microbiome."