bioconvert/bioconvert: v1.12.0

What's Changed Drop Python 3.8, add 3.11/3.12 support Fix incorrect conda environment creation command in README by @Copilot in https://github.com/bioconvert/bioconvert/pull/352 Fix maf2sam crash on MAF files containing comment lines (#) by @Copilot in https://github.com/bioconvert/bioconvert/pull/351 Add GENBANK2FAA converter by @Copilot in https://github.com/bioconvert/bioconvert/pull/353 Add .gbff as a recognized genbank extension Migrate CLI from argparse to click/rich_click Fix CRAM2FASTQ and CRAM2FASTA Add network graph format converters: GML, Pajek, GraphML by @Copilot in https://github.com/bioconvert/bioconvert/pull/357 Add small molecule converters: MOL2/SDF/PDB → SMILES by @Copilot in https://github.com/bioconvert/bioconvert/pull/359 Add TRANSFAC ↔ JASPAR motif format converters by @Copilot in https://github.com/bioconvert/bioconvert/pull/358 Fix test_converter_benchmark: logger.info() incompatible with easydev Logging API by @Copilot in https://github.com/bioconvert/bioconvert/pull/363 Fix all-versions test failures by making Benchmark import lazy by @Copilot in https://github.com/bioconvert/bioconvert/pull/365 Fix goalign nexus format mismatch and missing RTD sphinx dependencies Fix xlsx2csv: replace xlrd with openpyxl engine sra2fastq: add fasterq-dump method as default, keep fastq-dump as fallback Fix xlsx2csv CI: replace xlrd with openpyxl and pyexcel-xls with pyexcel-xlsx New Contributors @just-simon-5 made their first contribution in https://github.com/bioconvert/bioconvert/pull/340 @Copilot made their first contribution in https://github.com/bioconvert/bioconvert/pull/348 Full Changelog: https://github.com/bioconvert/bioconvert/compare/v1.1.1...v1.12.0