nf-core/mag: mag 5.4.1 - Yellow Frog patch

Changed #993 - Tweak test_full resources to stop failures (by @jfy133) #995 - Update CheckM and BUSCO modules (by @dialvarezs) Fixed #974 - Re-add accidently removed functionality for using metaSPAdes contigs downstream rather than scaffolds (reported by @Pranjal-Bioinfo, fix by @jfy133) #984 - Fix docs regarding usage of Bin QC tool scores when filtering bins for post-processing (by @dialvarezs, @claude) #987 - Fix several documentation issues (by @dialvarezs) #988 - Fix regarding validation of column long_reads_platform in the input samplesheet (#985 by @vinisalazar) #986 - Fix faulty ALE version YAML loading resulting in a snakeyaml error (by @jfy133) #992 - Fix command to get python package versions on local modules (by @dialvarezs) Dependencies | Tool | Previous version | New version | | ------ | ---------------- | ----------- | | CheckM | 1.2.3 | 1.2.5 | Full Changelog: https://github.com/nf-core/mag/compare/5.4.0...5.4.1