epi2me-labs/wf-amplicon: v1.2.2

Fixed medaka annotate would occasionally fail due to its input not being sorted by coordinate. This is fixed by explicitely sorting prior to the annotation step. Changed Updated to wf-template v5.7.1 to maintain compliance with our latest wf-template standard, changing: The README docs sections to move related protocols after inputs and outputs. Links in the README to point at our new documentation website. Our pre-commit configuration to resolve a dependency issue in our test infrastructure.