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OccurrencesInterface OccurrencesInterface-v1.2.2 Diff since OccurrencesInterface-v1.2.1 Merged pull requests: Update plotting extension to Makie for Phylopic (#468) (@tpoisot) Doc updates pre CSEE workshop (#473) (@tpoisot) Fix masking of occurrences by feature collections (#478) (@tpoisot) Bug fixes for SimpleSDMPolygons (#482) (@tpoisot) Fix the bug when masking a layer by a featurecollection (#483) (@tpoisot) Fix some bugs in SimpleSDMPolygons (#487) (@tpoisot) Experiments with AdaBoost (#488) (@tpoisot) Adding operations to SimpleSDMPolygons (#490) (@gottacatchenall) Support Makie v0.24 in SimpleSDMLayers (#491) (@tpoisot) Add Phylopic dep for 0.24 (#492) (@tpoisot) Clipping Polygons w/ Bounding Boxes (#495) (@gottacatchenall) boundingbox for MultiPolygon hotfix (#496) (@gottacatchenall) Training and thresholding improvements for SDeMo (#498) (@tpoisot) Adding CRS to construct polygons (#500) (@gottacatchenall) Explict specification of delimiter to GBIF CSV.File (#501) (@jeetsukumaran) Update to make decision stubs actually work (#502) (@tpoisot) CompatHelper: bump compat for JSON to 1 for package OccurrencesInterface, (keep existing compat) (#510) (@github-actions[bot]) SDeMo: PCA and Logistic automatically apply a z-score (#514) (@tpoisot) Fix PCA bug (#515) (@tpoisot) Fix for decision stumps (#518) (@tpoisot) Calibration improvements (#519) (@tpoisot) SDeMo v1.6.1 (#524) (@tpoisot) Occurrences with missing coordinates are handled during boundingbox (#526) (@tpoisot) Add a function to use the distance in degrees to generate pseudo-absences (#527) (@tpoisot) AdaBoost learning rate (#531) (@tpoisot) AdaBoost tweaks + rebalanced LOOCV (#532) (@tpoisot) Add admin areas from ESRI (#533) (@tpoisot) Add support for coordinates of instances in SDMs (#535) (@tpoisot) Update CHELSA to the new location (#537) (@tpoisot) Read scale and offset from geotiff layers (#541) (@tpoisot) Next version of SDeMo (#542) (@tpoisot) Add a trained label to SDMs (#543) (@tpoisot) Model components can be changed (just like variables) (#544) (@tpoisot) Conformal for SDeMo (#546) (@tpoisot) Documentation overhaul and SDeMo 1.8 integration (#550) (@tpoisot) Pretty dramatic performance improvement for sliding windows (#552) (@tpoisot) Allow reference value to be bassed to the summary function in sliding windows (#553) (@tpoisot) More general handing of SRS in layers (#556) (@tpoisot) Fix the bug of attempting to plot an empty polygon (#558) (@tpoisot) Handle projection function in SDT + graticule extension (#559) (@tpoisot) Add support for bivariate and VSUP palettes (#561) (@tpoisot) Improved color support in Phylopic (#563) (@tpoisot) Phylopic overwritten method (#568) (@tpoisot) Closed issues: Add global land use data projections (#31) Add bivariate and trivariate plots (#124) Calling boundingbox on a set of occurrences should ignore the occurrences with no coordinates (#409) CrossValidation type (#420) Cannot mask occurrences by a feature collection (#476) Masking a layer with a FeatureCollection is not working (#477) Bugfixes for polygons (#479) Resolv should be Resolve (fix + alias for compatibility) (#480) EPA polygons (I think I know why) are not working (#481) Cleanup the reference section of the package (#484) EPA polygons are on the side (#485) First polygon plotted by Makie has the wrong attributes (#486) No boundinngbox method for multipolygons (#494) Improvements to model thresholding (#497) Clipped polygons cannot be used to mask layers (#499) bug in virtual species documentation (#511) vcat doesn't work for MultiPolygons (#512) Update the SDM type with a trained flag (#513) Unfortunately, projections (#516) Decision stumps make weird predictions (#517) Add weights to isotonic calibration (#521) Platt calibration is very slow (#522) Add a link keyword to predict (#525) Re-balanced LOOCV (#529) Learning rate for AdaBoost (#530) CHELSA2 has been updated (#536) Conformal prediction (#538) Add a classifier! and transformer! method to change a model (#539) Check if layers have scale and offset info when reading from geotiff (#540) Add a Makie extension to SDeMo to plot instances (#545) Add integration between Conformal and layers (#547) Empty polygons break plotting (#554) PROJ4 can lead to loss of info (#555) Update SDT to rely more on the projection mechanism (#557) Method overwriting (#565)