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With the increased integration of renewable energy sources, the electricity systems face growing challenges due to the intermittency and volatility of weather-dependent generation. To maintain grid stability, reserve mechanisms such as the Automatic Frequency Restoration Reserve (aFRR) play a critical role by balancing supply and demand in real-time. However, high volatility of aFRR energy prices complicates the decision-making of reserve providers and market operators. To address this challenge, this paper aims to forecast 48-hour aFRR marginal energy prices in the Finnish electricity market under both Down- and Up-regulations. We implement and compare two tree-based models, LightGBM and XGBoost, with two deep learning approaches, the Temporal Fusion Transformer and the Time-series Dense Encoder. The models are trained using historical Finnish aFRR energy prices, complemented by relevant market and weather variables, and evaluated across three cross-validation strategies. The models achieved mean absolute errors of 17.5–17.8 for Down-regulation and 55–60 for Up-regulation, with LightGBM delivering the most robust performance under limited data availability. To our knowledge, this is the first study to systematically compare data-driven forecasting models for aFRR energy prices in the Finnish electricity market, providing an early-stage comparative baseline and economic relevance for a diverse array of stakeholders. • First study to forecast aFRR Down and Up marginal energy prices in Finland. • Comparison of deep learning and tree-based models for 48-hour price prediction. • LightGBM delivers the most consistent performance for Finnish aFRR price forecasting. • Comprehensive feature engineering with market, weather, and time data. • Evaluation uses three strategies to ensure robust and practical results.