HADDOCK3 - modular integrative modelling software

What's Changed add macos-latest to ci.yml by @rvhonorato in https://github.com/haddocking/haddock3/pull/1451 Replaced reference structure by NMR ensemble in docking-protein-zinc-finger example by @amjjbonvin in https://github.com/haddocking/haddock3/pull/1452 remove deprecated gdock sampling module by @rvhonorato in https://github.com/haddocking/haddock3/pull/1454 skip issues with planned-long-term from being marked as stale by @rvhonorato in https://github.com/haddocking/haddock3/pull/1455 simplify the use of set of ambig as archives by @VGPReys in https://github.com/haddocking/haddock3/pull/1424 Bump plotly from 6.4.0 to 6.5.0 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1458 Bump fastapi from 0.121.0 to 0.123.0 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1456 Bump kaleido from 1.1.0 to 1.2.0 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1457 Add SBGrid badge to README by @AnnaEngel98 in https://github.com/haddocking/haddock3/pull/1461 Added missing NGA glycan parameters - issue #1462 by @amjjbonvin in https://github.com/haddocking/haddock3/pull/1463 Update DOI badge in README.md by @amjjbonvin in https://github.com/haddocking/haddock3/pull/1464 Bump fastapi from 0.123.0 to 0.128.0 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1467 Bump plotly from 6.5.0 to 6.5.2 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1468 fallback to Scheduler if the GRID is not available on runtime by @rvhonorato in https://github.com/haddocking/haddock3/pull/1473 tidy before splitting input with MODEL record by @rvhonorato in https://github.com/haddocking/haddock3/pull/1474 Add more international goodbyes by @rvhonorato in https://github.com/haddocking/haddock3/pull/1478 add has_chrome decorator by @rvhonorato in https://github.com/haddocking/haddock3/pull/1479 add automated toppar generation for unknown small molecules by @rvhonorato in https://github.com/haddocking/haddock3/pull/1476 Bump fastapi from 0.128.0 to 0.128.8 by @dependabot[bot] in https://github.com/haddocking/haddock3/pull/1483 Implement ilRMSD based clustering on protein-ligand examples - issue #1481 by @amjjbonvin in https://github.com/haddocking/haddock3/pull/1482 Adding type to seed option in haddock3-restraints random_removal subcommand by @VGPReys in https://github.com/haddocking/haddock3/pull/1487 Bugfix: use of HETATM in caprieval by @VGPReys in https://github.com/haddocking/haddock3/pull/1430 New Contributors @AnnaEngel98 made their first contribution in https://github.com/haddocking/haddock3/pull/1461 Full Changelog: https://github.com/haddocking/haddock3/compare/2025.11.0...2026.3.0