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This directory contains the 76 GEMs reconstructed for the *Sulfolobus*-panGEM. The folder GCA_000012285 contains the models from *S.acidocaldarius* reference genome (strain DSM 639) For every genome id (genome1) there are two GEM reconstructions depending of the medium used during the gapfilling: Define medium (MM_VD_1_Ni_wo_0) folder, which contains: The first reconstructed model without alterations (model1.xml). Another folder (cured_model1), which in turn contains: The cured version of the model (model1.xml). Another folder (homolog_saciRefProtein), which in turn contains: The cured model with the correct ids for *S.acidocaldarius* genes (model1.xm Complex medium (MM_aerobic_CO2_H2_glcaa/) folder, which contains the same files as the defined one. The models inside "homolog_saciRefProtein/" folder were the ones used for the different panGEM analysis. Most of these models are the same as the cured ones, just those reconstructed from a GenBank genome (GCA) needed a change in their gene ids, and because of that,these folders also contain an extra file (model1_vs_saciRefProtein.tsv) with the BLAST results.