nf-core/viralmetagenome: v1.1.1 - Azure Albatross

Added Template update for nf-core/tools v3.5.2 (#270) (by @Joon-Klaps) Modules update to latest nf-core versions (#271) (by @Joon-Klaps) Update local modules to use topics (#272) (by @Joon-Klaps) Add better output file descriptions for prokka #274 (by @Joon-Klaps) Better item descriptors (it -> [it[0], it[1] to meta, fasta , _foo -> [meta,fasta]) for better readability (#265) (by @Joon-Klaps) Include the new parameter --transpose_overview_tables , fixes #220 (#275) (by @Joon-Klaps) Bump version from dev to 1.1.1 for release (#277) (by @Joon-Klaps) Fixed Follow the rules of strict syntax health #265 (by @Joon-Klaps) Moved the module specifics from base.config to modules.config (#265) Fix bug from regex in input schema still allowing underscores in sample and group names (#269) - (by @Joon-Klaps) Dependencies | Dependency | Old version | New version | | ---------- | ----------- | ----------- | | snpeff | 5.3.0a | 5.4.0a | Parameters | Old parameter | New parameter | | ------------- | ----------------------------- | | | --transpose_overview_tables | NB: Parameter has been updated if both old and new parameter information is present. NB: Parameter has been added if just the new parameter information is present.