MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

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Authors

Marcela Uliano‐Silva · Wellcome Sanger Institute

João Gabriel R. N. Ferreira · Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro

Ksenia Krasheninnikova · Wellcome Sanger Institute

Mark Blaxter · Wellcome Sanger Institute

Nova Mieszkowska

Neil Hall

Peter W. H. Holland

Richard Durbin · University of Cambridge

Abstract

MitoHiFi is able to assemble mitochondrial genomes from a wide phylogenetic range of taxa from Pacbio HiFi data. MitoHiFi is written in python and is freely available on GitHub ( https://github.com/marcelauliano/MitoHiFi ). MitoHiFi is available with its dependencies as a Docker container on GitHub (ghcr.io/marcelauliano/mitohifi:master).

Topics & Keywords

Genomics and Phylogenetic Studies Genetic diversity and population structure Protist diversity and phylogeny

Publication Details

Published in: BMC Bioinformatics

Volume 24, Issue 1, pp. 288-288

DOI: 10.1186/s12859-023-05385-y

Field-Weighted Citation Impact: 261.19

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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

Authors

Abstract

Topics & Keywords

Publication Details