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Shane McCarthy | Researchclopedia

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Shane McCarthy

Johnson & Johnson (United States)ORCID

212

Works

103,758

Citations

53

h-index

96

i10-index

Research Topics

Genomics and Phylogenetic Studies Genetic diversity and population structure Genetic Associations and Epidemiology

Affiliations

Shepherd University2023–2023

Broad Institute2022–2024

University of Geneva2016–2016

United States Nuclear Regulatory Commission2017–2017

European Bioinformatics Institute2015–2015

Top Works

Twelve years of SAMtools and BCFtools

Petr Danecek,James Bonfield,et al.

202114,891 citations

Chromosomal and Genetic Variations

Genetic Mapping and Diversity in Plants and Animals

A reference panel of 64,976 haplotypes for genotype imputation

Richard Durbin,Klaudia Walter,et al.

20163,230 citations

Towards complete and error-free genome assemblies of all vertebrate species

Arang Rhie,Shane McCarthy,et al.

20212,930 citations

Identifying and removing haplotypic duplication in primary genome assemblies

Dengfeng Guan,Shane McCarthy,et al.

20202,733 citations

An integrated map of structural variation in 2,504 human genomes

Peter H. Sudmant,Tobias Rausch,et al.

20152,622 citations

YaHS: yet another Hi-C scaffolding tool

Chenxi Zhou,Shane McCarthy,et al.

20222,120 citations

Reference-based phasing using the Haplotype Reference Consortium panel

Po‐Ru Loh,Petr Danecek,et al.

20161,971 citations

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

Marcela Uliano‐Silva,João Gabriel R. N. Ferreira,et al.

20231,700 citations

The UK10K project identifies rare variants in health and disease

Writing group,Klaudia Walter,et al.

20151,182 citations