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Susan Holmes | Researchclopedia

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Susan Holmes

Palo Alto University ORCID

392

Works

115,734

Citations

80

h-index

204

i10-index

Research Topics

Gut microbiota and health HIV Research and Treatment Bayesian Methods and Mixture Models

Affiliations

NOAA National Marine Fisheries Service2014–2014

University of Southern California2013–2013

University of Maryland, Baltimore2025–2025

Seattle Children's Hospital2023–2023

March of Dimes2015–2015

Top Works

DADA2: High-resolution sample inference from Illumina amplicon data

Benjamin J. Callahan,Paul J. McMurdie,et al.

201634,825 citations

Immune Cell Function and Interaction

HIV/AIDS drug development and treatment

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

Evan Bolyen,Jai Ram Rideout,et al.

201922,996 citations

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

Paul J. McMurdie,Susan Holmes

201321,805 citations

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Nicole M. Davis,Diana M. Proctor,et al.

20183,407 citations

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

Benjamin J. Callahan,Paul J. McMurdie,et al.

20173,354 citations

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

Paul J. McMurdie,Susan Holmes

20143,026 citations

Temporal and spatial variation of the human microbiota during pregnancy

Daniel B. DiGiulio,Benjamin J. Callahan,et al.

20151,184 citations

Variability in the analysis of a single neuroimaging dataset by many teams

Rotem Botvinik‐Nezer,Felix Holzmeister,et al.

20201,165 citations

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

Ben J. Callahan,Kris Sankaran,et al.

2016976 citations