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Daehwan Kim | Researchclopedia

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Daehwan Kim

Sungkyunkwan University ORCID

22

Works

77,185

Citations

11

h-index

12

i10-index

Research Topics

Genomics and Phylogenetic Studies RNA modifications and cancer RNA and protein synthesis mechanisms

Affiliations

Johns Hopkins University2012–2017

Johns Hopkins Medicine2012–2017

Southwestern Medical Center2019–2022

Southwestern Medical Center2021–2023

University of Maryland, College Park2011–2013

Top Works

HISAT: a fast spliced aligner with low memory requirements

Daehwan Kim,Ben Langmead,et al.

201525,486 citations

Gene Regulatory Network Analysis

Single-cell and spatial transcriptomics

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

Daehwan Kim,Joseph M. Paggi,et al.

201915,013 citations

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim,Geo Pertea,et al.

201313,589 citations

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell,Adam Roberts,et al.

201212,815 citations

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

Mihaela Pertea,Daehwan Kim,et al.

20167,460 citations

Centrifuge: rapid and sensitive classification of metagenomic sequences

Daehwan Kim,Li Song,et al.

20161,494 citations

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

Daehwan Kim,Steven L. Salzberg

2011843 citations

Rapid and accurate alignment of nucleotide conversion sequencing reads with HISAT-3N

Yun Zhang,Chanhee Park,et al.

2021365 citations

Centrifuge: rapid and sensitive classification of metagenomic sequences

Daehwan Kim,Li Song,et al.

2016109 citations