Researchclopedia

Research Researchers Institutions Topics Submit About

Command Palette

Search for a command to run...

Researchclopedia

Research Researchers Institutions About

© 2026 Researchclopedia. Powered by OpenAlex under CC0 license.

Harold Pimentel | Researchclopedia

Back to researchers

Harold Pimentel

University of California, Los Angeles ORCID

62

Works

41,870

Citations

22

h-index

28

i10-index

Research Topics

Genomics and Phylogenetic Studies RNA modifications and cancer Gene expression and cancer classification

Affiliations

Broad Institute2011–2011

New York Blood Center2014–2014

Howard Hughes Medical Institute2019–2024

Harvard University2011–2011

Lawrence Berkeley National Laboratory2014–2014

Top Works

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim,Geo Pertea,et al.

201313,589 citations

Molecular Biology Techniques and Applications

RNA Research and Splicing

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell,Adam Roberts,et al.

201212,815 citations

Near-optimal probabilistic RNA-seq quantification

Nicolas Bray,Harold Pimentel,et al.

201610,740 citations

Differential analysis of RNA-seq incorporating quantification uncertainty

Harold Pimentel,Nicolas Bray,et al.

20171,686 citations

Identification of novel transcripts in annotated genomes using RNA-Seq

Adam Roberts,Harold Pimentel,et al.

20111,023 citations

Intron retention is a source of neoepitopes in cancer

Alicia Smart,Claire A. Margolis,et al.

2018327 citations

Erratum: Near-optimal probabilistic RNA-seq quantification

Nicolas Bray,Harold Pimentel,et al.

2016307 citations

A dynamic intron retention program enriched in RNA processing genes regulates gene expression during terminal erythropoiesis

Harold Pimentel,Marilyn Parra,et al.

2015204 citations

Gene-level differential analysis at transcript-level resolution

Lynn Yi,Harold Pimentel,et al.

2018167 citations